Oliver's mTOR Atlas

Reviewed 1d ago.

• tools: 11 tools scanned
• metadata: scanned
• packages: 1 checked

No findings.

Tools (11)

• atlas_about

  Dataset version, corpus snapshot date, counts, evidence-code legend and how to cite the dataset.

• search_studies

  Search the curated studies by keywords (title, finding, authors, journal, model system), optionally filtered by evidence code, a linked entity (gene, drug, disease...) and year range. Returns summary records with evidence codes and URLs.

• get_study

  Full record for one study by Atlas ID (e.g. "SAB1994"): abstract excerpt, extracted findings, linked entities, the relations it supports or contradicts, related open questions.

• search_entities

  Find genes/proteins, complexes, drugs, diseases, processes, nutrients and outcomes by name or synonym.

• get_entity

  One entity (gene/protein, complex, drug, disease, process...) with its linked studies as short cards (first studies_limit) and every pathway relation it takes part in as a one-line claim. Accepts an id, a name or a synonym.

• find_relations

  Signed, evidence-linked pathway relations (claims such as "Rheb activates mTORC1"). Filter by an entity on either end, by source/target, effect, contested status or minimum strength of the best supporting evidence.

• get_relation

  One pathway relation by ID (e.g. "RHEB-MTORC1"): mechanism, boundary conditions, confidence, supporting and conflicting studies.

• evidence_between

  Direct curated relations between two entities (either direction) with full cards for the supporting and conflicting studies. Answers questions such as "what is the evidence that A acts on B?".

• find_contradictions

  Relations the Atlas marks as contested or that carry conflicting studies, with both sides of the evidence. Optionally limited to one entity.

• list_questions

  The Atlas's open questions (evidence gaps with testable hypotheses) and frontier questions.

• get_question

  One open or frontier question by ID (e.g. "H1", "F2"): the gap, what changed, what is still open, how it could be tested, linked studies.