npm · biomcp
ANALYSIS_BIOWASM — Set to 1 to enable the samtools/bedtools/bcftools biowasm analysis tools
ANALYSIS_R — Set to 1 to enable the R/Bioconductor analysis tools (requires the webr peer dependency; use the pinned one-shot client command)
DB_TYPE — Set to mysql or sqlite to enable the read-only SQL database tools
NCBI_API_KEY · secret — Higher NCBI E-utilities rate limits (3 -> 10 req/s)
S2_API_KEY · secret — Higher Semantic Scholar rate limits
OPENFDA_API_KEY · secret — Higher OpenFDA rate limits
ONCOKB_TOKEN · secret — Required by the variant_oncokb tool (OncoKB annotations)
DISGENET_API_KEY · secret — Required for DisGeNET disease-gene associations